Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 KRT16P1-201ENST00000399124 1418 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
FOXA3P55318 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 AC006449.5-201ENST00000610658 2098 ntBASIC13.12□□□□□ -0.31
FOXA3P55318 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 AC007950.2-201ENST00000615045 2347 ntBASIC13.12□□□□□ -0.31
FOXA3P55318 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC13.12□□□□□ -0.31
FOXA3P55318 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 AP002982.1-201ENST00000492365 877 ntBASIC13.12□□□□□ -0.31
FOXA3P55318 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.12□□□□□ -0.31
FOXA3P55318 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.12□□□□□ -0.31
FOXA3P55318 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 AL137784.2-201ENST00000607332 1000 ntBASIC13.12□□□□□ -0.31
FOXA3P55318 GAMT-205ENST00000640762 751 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA3P55318 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA3P55318 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA3P55318 AC022188.1-201ENST00000620960 1664 ntBASIC13.12□□□□□ -0.31
FOXA3P55318 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 AC009949.1-201ENST00000623048 1830 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 AC096733.2-201ENST00000609937 1394 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 AL662844.4-201ENST00000606367 2838 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
FOXA3P55318 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC13.11□□□□□ -0.31
FOXA3P55318 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.11□□□□□ -0.31
FOXA3P55318 AC133681.1-201ENST00000465482 601 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 AC011506.1-201ENST00000474329 610 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC13.11□□□□□ -0.31
FOXA3P55318 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC13.11□□□□□ -0.31
FOXA3P55318 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC13.11□□□□□ -0.31
FOXA3P55318 AC008687.5-201ENST00000593746 558 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 AC069544.1-201ENST00000609399 999 ntBASIC13.11□□□□□ -0.31
FOXA3P55318 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA3P55318 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA3P55318 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
FOXA3P55318 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms