Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CDH12P55289 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CDH12P55289 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDH12P55289 PCDHB19P-201ENST00000570871 2371 ntBASIC16.25■□□□□ 0.19
CDH12P55289 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH12P55289 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 MIR662-201ENST00000384847 95 ntBASIC16.25■□□□□ 0.19
CDH12P55289 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
CDH12P55289 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH12P55289 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.25■□□□□ 0.19
CDH12P55289 HOMER2P1-201ENST00000455653 964 ntBASIC16.25■□□□□ 0.19
CDH12P55289 AL359075.1-203ENST00000462729 1002 ntBASIC16.25■□□□□ 0.19
CDH12P55289 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 AC112698.1-201ENST00000510299 916 ntBASIC16.25■□□□□ 0.19
CDH12P55289 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH12P55289 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDH12P55289 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.25■□□□□ 0.19
CDH12P55289 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH12P55289 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
CDH12P55289 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH12P55289 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH12P55289 HBZP1-201ENST00000354915 429 ntBASIC16.24■□□□□ 0.19
CDH12P55289 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 AK4P3-201ENST00000418260 669 ntBASIC16.24■□□□□ 0.19
CDH12P55289 AC112907.2-201ENST00000448639 330 ntBASIC16.24■□□□□ 0.19
CDH12P55289 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.24■□□□□ 0.19
CDH12P55289 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH12P55289 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.24■□□□□ 0.19
CDH12P55289 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.24■□□□□ 0.19
CDH12P55289 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH12P55289 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH12P55289 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.24■□□□□ 0.19
CDH12P55289 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.24■□□□□ 0.19
CDH12P55289 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.24■□□□□ 0.19
CDH12P55289 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CDH12P55289 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH12P55289 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 AL353692.3-201ENST00000407031 1396 ntBASIC16.24■□□□□ 0.19
CDH12P55289 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH12P55289 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
CDH12P55289 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CDH12P55289 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CDH12P55289 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.23■□□□□ 0.19
CDH12P55289 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms