Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.33■□□□□ 0.85
MRE11P49959 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.33■□□□□ 0.85
MRE11P49959 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.33■□□□□ 0.85
MRE11P49959 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.33■□□□□ 0.85
MRE11P49959 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
MRE11P49959 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.33■□□□□ 0.85
MRE11P49959 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
MRE11P49959 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.33■□□□□ 0.84
MRE11P49959 AC100803.2-201ENST00000562459 1963 ntBASIC20.33■□□□□ 0.84
MRE11P49959 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
MRE11P49959 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.33■□□□□ 0.84
MRE11P49959 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
MRE11P49959 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MRE11P49959 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
MRE11P49959 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MRE11P49959 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC20.32■□□□□ 0.84
MRE11P49959 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
MRE11P49959 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.32■□□□□ 0.84
MRE11P49959 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.32■□□□□ 0.84
MRE11P49959 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.32■□□□□ 0.84
MRE11P49959 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
MRE11P49959 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.32■□□□□ 0.84
MRE11P49959 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
MRE11P49959 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
MRE11P49959 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.32■□□□□ 0.84
MRE11P49959 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.32■□□□□ 0.84
MRE11P49959 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
MRE11P49959 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MRE11P49959 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.31■□□□□ 0.84
MRE11P49959 AC117947.1-201ENST00000427448 529 ntBASIC20.31■□□□□ 0.84
MRE11P49959 FAM86EP-206ENST00000510506 987 ntBASIC20.31■□□□□ 0.84
MRE11P49959 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.31■□□□□ 0.84
MRE11P49959 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.31■□□□□ 0.84
MRE11P49959 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.31■□□□□ 0.84
MRE11P49959 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.31■□□□□ 0.84
MRE11P49959 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 AC116353.5-201ENST00000638148 1699 ntBASIC20.31■□□□□ 0.84
MRE11P49959 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MRE11P49959 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.31■□□□□ 0.84
MRE11P49959 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC20.3■□□□□ 0.84
MRE11P49959 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 AC023824.1-201ENST00000562945 2975 ntBASIC20.3■□□□□ 0.84
MRE11P49959 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.3■□□□□ 0.84
MRE11P49959 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 AC091390.4-202ENST00000476426 537 ntBASIC20.3■□□□□ 0.84
MRE11P49959 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 Z85996.1-201ENST00000494644 937 ntBASIC20.3■□□□□ 0.84
MRE11P49959 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.3■□□□□ 0.84
MRE11P49959 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MRE11P49959 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
MRE11P49959 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
MRE11P49959 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MRE11P49959 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.3■□□□□ 0.84
MRE11P49959 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.29■□□□□ 0.84
MRE11P49959 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms