Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.41■□□□□ 0.22
CLK1P49759 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.41■□□□□ 0.22
CLK1P49759 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.41■□□□□ 0.22
CLK1P49759 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
CLK1P49759 AC079602.3-201ENST00000623931 403 ntBASIC16.41■□□□□ 0.22
CLK1P49759 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CLK1P49759 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CLK1P49759 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CLK1P49759 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.41■□□□□ 0.22
CLK1P49759 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.41■□□□□ 0.22
CLK1P49759 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 PCDH8P1-201ENST00000428983 2773 ntBASIC16.41■□□□□ 0.22
CLK1P49759 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.41■□□□□ 0.22
CLK1P49759 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 LINC01126-201ENST00000623515 1646 ntBASIC16.41■□□□□ 0.22
CLK1P49759 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLK1P49759 FLJ16779-201ENST00000612722 7638 ntBASIC16.41■□□□□ 0.22
CLK1P49759 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 AL162727.3-201ENST00000635661 2787 ntBASIC16.4■□□□□ 0.22
CLK1P49759 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLK1P49759 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLK1P49759 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.4■□□□□ 0.22
CLK1P49759 HBZP1-201ENST00000354915 429 ntBASIC16.4■□□□□ 0.22
CLK1P49759 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.4■□□□□ 0.22
CLK1P49759 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLK1P49759 KRT18P48-201ENST00000434763 852 ntBASIC16.4■□□□□ 0.22
CLK1P49759 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 AC112907.2-201ENST00000448639 330 ntBASIC16.4■□□□□ 0.22
CLK1P49759 KRT18P38-201ENST00000449496 1282 ntBASIC16.4■□□□□ 0.22
CLK1P49759 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.4■□□□□ 0.22
CLK1P49759 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 AL359075.1-203ENST00000462729 1002 ntBASIC16.4■□□□□ 0.22
CLK1P49759 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CLK1P49759 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.4■□□□□ 0.22
CLK1P49759 AL049597.2-201ENST00000565575 961 ntBASIC16.4■□□□□ 0.22
CLK1P49759 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.4■□□□□ 0.22
CLK1P49759 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.4■□□□□ 0.22
CLK1P49759 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.4■□□□□ 0.22
CLK1P49759 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
CLK1P49759 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLK1P49759 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.4■□□□□ 0.22
CLK1P49759 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLK1P49759 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 PHGDH-209ENST00000641074 1780 ntBASIC16.39■□□□□ 0.21
CLK1P49759 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
CLK1P49759 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CLK1P49759 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.39■□□□□ 0.21
CLK1P49759 MIR662-201ENST00000384847 95 ntBASIC16.39■□□□□ 0.21
CLK1P49759 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.39■□□□□ 0.21
CLK1P49759 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.39■□□□□ 0.21
CLK1P49759 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.39■□□□□ 0.21
CLK1P49759 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.39■□□□□ 0.21
CLK1P49759 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.39■□□□□ 0.21
CLK1P49759 HYMAI.1-201ENST00000620949 238 ntBASIC16.39■□□□□ 0.21
CLK1P49759 AL590326.2-201ENST00000625139 305 ntBASIC16.39■□□□□ 0.21
CLK1P49759 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 PCDHB19P-201ENST00000570871 2371 ntBASIC16.39■□□□□ 0.21
CLK1P49759 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLK1P49759 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms