Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
CCNFP41002 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 BX276092.5-203ENST00000456199 560 ntBASIC17.54■□□□□ 0.4
CCNFP41002 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.54■□□□□ 0.4
CCNFP41002 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.54■□□□□ 0.4
CCNFP41002 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.54■□□□□ 0.4
CCNFP41002 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 AL121672.3-201ENST00000608644 468 ntBASIC17.54■□□□□ 0.4
CCNFP41002 AL139327.4-201ENST00000612362 153 ntBASIC17.54■□□□□ 0.4
CCNFP41002 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.54■□□□□ 0.4
CCNFP41002 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCNFP41002 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCNFP41002 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CCNFP41002 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.53■□□□□ 0.4
CCNFP41002 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CCNFP41002 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.53■□□□□ 0.4
CCNFP41002 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
CCNFP41002 AC112698.1-201ENST00000510299 916 ntBASIC17.53■□□□□ 0.4
CCNFP41002 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.53■□□□□ 0.4
CCNFP41002 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.53■□□□□ 0.4
CCNFP41002 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCNFP41002 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCNFP41002 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.53■□□□□ 0.4
CCNFP41002 PCDHB19P-201ENST00000570871 2371 ntBASIC17.53■□□□□ 0.4
CCNFP41002 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCNFP41002 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCNFP41002 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNFP41002 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNFP41002 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNFP41002 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNFP41002 FLJ38576-201ENST00000623820 2459 ntBASIC17.52■□□□□ 0.4
CCNFP41002 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
CCNFP41002 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.52■□□□□ 0.4
CCNFP41002 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.52■□□□□ 0.4
CCNFP41002 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.52■□□□□ 0.4
CCNFP41002 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNFP41002 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNFP41002 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNFP41002 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNFP41002 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCNFP41002 LINC02012-201ENST00000608206 1725 ntBASIC17.52■□□□□ 0.39
CCNFP41002 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNFP41002 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNFP41002 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCNFP41002 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms