Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.17■□□□□ 0.02
COL8A1P27658 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
COL8A1P27658 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL8A1P27658 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.17■□□□□ 0.02
COL8A1P27658 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.16■□□□□ 0.02
COL8A1P27658 KRT18P32-201ENST00000424695 1287 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 AL671277.1-201ENST00000429656 993 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.16■□□□□ 0.02
COL8A1P27658 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.16■□□□□ 0.02
COL8A1P27658 SPDYE11-202ENST00000450699 704 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.16■□□□□ 0.02
COL8A1P27658 SPDYE9P-201ENST00000570642 692 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 SPDYE10P-202ENST00000612005 668 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 SPDYE8P-202ENST00000612377 668 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 AL358472.5-202ENST00000641448 1267 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.16■□□□□ 0.02
COL8A1P27658 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
COL8A1P27658 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.16■□□□□ 0.02
COL8A1P27658 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.16■□□□□ 0.02
COL8A1P27658 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL8A1P27658 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.16■□□□□ 0.02
COL8A1P27658 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL8A1P27658 AC132938.6-201ENST00000623828 1655 ntBASIC15.16■□□□□ 0.02
COL8A1P27658 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 AL353593.2-201ENST00000602529 1483 ntBASIC15.15■□□□□ 0.02
COL8A1P27658 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 PI4KAP1-204ENST00000612579 1703 ntBASIC15.15■□□□□ 0.02
COL8A1P27658 AC097637.2-201ENST00000624096 1997 ntBASIC15.15■□□□□ 0.02
COL8A1P27658 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 ARSEP1-201ENST00000420443 635 ntBASIC15.15■□□□□ 0.02
COL8A1P27658 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
COL8A1P27658 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 DDX43P3-201ENST00000441064 443 ntBASIC15.15■□□□□ 0.02
COL8A1P27658 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.15■□□□□ 0.02
COL8A1P27658 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.15■□□□□ 0.02
COL8A1P27658 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.15■□□□□ 0.02
COL8A1P27658 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL8A1P27658 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 AL662799.1-202ENST00000614205 422 ntBASIC15.15■□□□□ 0.02
COL8A1P27658 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms