Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
COL5A3P25940 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
COL5A3P25940 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
COL5A3P25940 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
COL5A3P25940 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 GAPDHP21-201ENST00000450301 1010 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 AC097493.3-201ENST00000509725 367 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 IGHV3-42-201ENST00000520410 361 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 AP005018.1-201ENST00000525475 301 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
COL5A3P25940 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.67■■□□□ 1.06
COL5A3P25940 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.67■■□□□ 1.06
COL5A3P25940 AL138781.2-201ENST00000617896 1843 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A3P25940 FOXO1B-201ENST00000504678 1527 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 AP000974.1-201ENST00000623909 2387 ntBASIC21.67■■□□□ 1.06
COL5A3P25940 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 TNXA-203ENST00000507684 2038 ntBASIC21.66■■□□□ 1.06
COL5A3P25940 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL5A3P25940 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 AC100757.3-201ENST00000622361 1406 ntBASIC21.66■■□□□ 1.06
COL5A3P25940 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL5A3P25940 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC21.66■■□□□ 1.06
COL5A3P25940 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.66■■□□□ 1.06
COL5A3P25940 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A3P25940 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A3P25940 AC008267.7-201ENST00000624570 1194 ntBASIC21.66■■□□□ 1.06
COL5A3P25940 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
COL5A3P25940 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
COL5A3P25940 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.65■■□□□ 1.06
COL5A3P25940 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.65■■□□□ 1.06
COL5A3P25940 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL5A3P25940 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.65■■□□□ 1.06
COL5A3P25940 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL5A3P25940 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.65■■□□□ 1.06
COL5A3P25940 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.65■■□□□ 1.06
COL5A3P25940 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A3P25940 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A3P25940 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A3P25940 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A3P25940 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A3P25940 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A3P25940 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
COL5A3P25940 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.64■■□□□ 1.06
COL5A3P25940 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.64■■□□□ 1.06
COL5A3P25940 INGX-202ENST00000489074 768 ntBASIC21.64■■□□□ 1.06
COL5A3P25940 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
COL5A3P25940 AC090164.3-201ENST00000610780 2143 ntBASIC21.64■■□□□ 1.06
COL5A3P25940 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A3P25940 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
COL5A3P25940 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A3P25940 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.64■■□□□ 1.05
COL5A3P25940 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A3P25940 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.64■■□□□ 1.05
COL5A3P25940 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 SERBP1P5-201ENST00000510079 1181 ntBASIC21.63■■□□□ 1.05
COL5A3P25940 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms