Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA1P02708 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA1P02708 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA1P02708 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA1P02708 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CHRNA1P02708 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.82■□□□□ 0.6
CHRNA1P02708 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.82■□□□□ 0.6
CHRNA1P02708 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.82■□□□□ 0.6
CHRNA1P02708 AC022145.2-201ENST00000598203 171 ntBASIC18.82■□□□□ 0.6
CHRNA1P02708 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA1P02708 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.82■□□□□ 0.6
CHRNA1P02708 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.82■□□□□ 0.6
CHRNA1P02708 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CHRNA1P02708 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CHRNA1P02708 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA1P02708 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHRNA1P02708 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.81■□□□□ 0.6
CHRNA1P02708 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.81■□□□□ 0.6
CHRNA1P02708 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.81■□□□□ 0.6
CHRNA1P02708 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.81■□□□□ 0.6
CHRNA1P02708 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHRNA1P02708 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHRNA1P02708 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CHRNA1P02708 LYSMD4-203ENST00000378904 2122 ntBASIC18.81■□□□□ 0.6
CHRNA1P02708 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.81■□□□□ 0.6
CHRNA1P02708 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 ADH5P3-201ENST00000433842 1137 ntBASIC18.81■□□□□ 0.6
CHRNA1P02708 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.81■□□□□ 0.6
CHRNA1P02708 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.81■□□□□ 0.6
CHRNA1P02708 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.81■□□□□ 0.6
CHRNA1P02708 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA1P02708 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
CHRNA1P02708 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CHRNA1P02708 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.8■□□□□ 0.6
CHRNA1P02708 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.8■□□□□ 0.6
CHRNA1P02708 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 AC107918.2-201ENST00000530817 355 ntBASIC18.8■□□□□ 0.6
CHRNA1P02708 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.8■□□□□ 0.6
CHRNA1P02708 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
CHRNA1P02708 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.8■□□□□ 0.6
CHRNA1P02708 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA1P02708 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CHRNA1P02708 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA1P02708 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms