Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TBCB-214ENST00000629269 413 ntTSL 5 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 AC099343.3-201ENST00000605834 2503 ntBASIC13.13□□□□□ -0.31
HLA-DQA1P01909 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 AC078925.2-201ENST00000624013 1973 ntBASIC13.13□□□□□ -0.31
HLA-DQA1P01909 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 UNC93B4-201ENST00000505679 747 ntBASIC13.13□□□□□ -0.31
HLA-DQA1P01909 CD99P1-205ENST00000527459 561 ntBASIC13.13□□□□□ -0.31
HLA-DQA1P01909 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DQA1P01909 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 KRT17P3-201ENST00000420566 1262 ntBASIC13.12□□□□□ -0.31
HLA-DQA1P01909 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC13.12□□□□□ -0.31
HLA-DQA1P01909 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms