Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NKX2-2O95096 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
NKX2-2O95096 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-2O95096 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-2O95096 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
NKX2-2O95096 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NKX2-2O95096 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX2-2O95096 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.05■□□□□ 0.16
NKX2-2O95096 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.05■□□□□ 0.16
NKX2-2O95096 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 CLEC4GP1-201ENST00000596555 870 ntBASIC16.05■□□□□ 0.16
NKX2-2O95096 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-2O95096 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-2O95096 EGFEM1P-202ENST00000431685 1563 ntBASIC16.04■□□□□ 0.16
NKX2-2O95096 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX2-2O95096 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
NKX2-2O95096 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.04■□□□□ 0.16
NKX2-2O95096 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 ACTG1P4-201ENST00000425123 1122 ntBASIC16.04■□□□□ 0.16
NKX2-2O95096 PRYP5-201ENST00000451909 266 ntBASIC16.04■□□□□ 0.16
NKX2-2O95096 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 KRT18P56-201ENST00000507275 550 ntBASIC16.04■□□□□ 0.16
NKX2-2O95096 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
NKX2-2O95096 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
NKX2-2O95096 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX2-2O95096 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX2-2O95096 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-2O95096 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
NKX2-2O95096 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 AC080080.1-201ENST00000625121 2420 ntBASIC16.03■□□□□ 0.16
NKX2-2O95096 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms