Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.99■□□□□ 0.31
SDC3O75056 CNN2P11-201ENST00000429351 262 ntBASIC16.99■□□□□ 0.31
SDC3O75056 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.99■□□□□ 0.31
SDC3O75056 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SDC3O75056 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 KRT19P2-202ENST00000557173 1012 ntBASIC16.99■□□□□ 0.31
SDC3O75056 PDPK2P-202ENST00000562415 1191 ntBASIC16.99■□□□□ 0.31
SDC3O75056 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.99■□□□□ 0.31
SDC3O75056 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 ELL2P1-201ENST00000413990 1906 ntBASIC16.99■□□□□ 0.31
SDC3O75056 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.99■□□□□ 0.31
SDC3O75056 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.99■□□□□ 0.31
SDC3O75056 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.99■□□□□ 0.31
SDC3O75056 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.98■□□□□ 0.31
SDC3O75056 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.98■□□□□ 0.31
SDC3O75056 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.98■□□□□ 0.31
SDC3O75056 AC025580.3-201ENST00000617932 1424 ntBASIC16.98■□□□□ 0.31
SDC3O75056 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.98■□□□□ 0.31
SDC3O75056 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.98■□□□□ 0.31
SDC3O75056 AC254562.1-201ENST00000417586 456 ntBASIC16.98■□□□□ 0.31
SDC3O75056 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.98■□□□□ 0.31
SDC3O75056 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SDC3O75056 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.98■□□□□ 0.31
SDC3O75056 GGTLC5P-201ENST00000617623 998 ntBASIC16.98■□□□□ 0.31
SDC3O75056 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SDC3O75056 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.98■□□□□ 0.31
SDC3O75056 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.98■□□□□ 0.31
SDC3O75056 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.98■□□□□ 0.31
SDC3O75056 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDC3O75056 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SDC3O75056 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 MYCLP1-201ENST00000372451 1075 ntBASIC16.97■□□□□ 0.31
SDC3O75056 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 FAM58CP-201ENST00000435741 640 ntBASIC16.97■□□□□ 0.31
SDC3O75056 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
SDC3O75056 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.97■□□□□ 0.31
SDC3O75056 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 AC096734.2-201ENST00000562054 433 ntBASIC16.97■□□□□ 0.31
SDC3O75056 AL031432.2-201ENST00000566714 459 ntBASIC16.97■□□□□ 0.31
SDC3O75056 AL928711.1-201ENST00000570165 459 ntBASIC16.97■□□□□ 0.31
SDC3O75056 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.97■□□□□ 0.31
SDC3O75056 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
SDC3O75056 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.97■□□□□ 0.31
SDC3O75056 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 AC090164.3-201ENST00000610780 2143 ntBASIC16.97■□□□□ 0.31
SDC3O75056 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SDC3O75056 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.97■□□□□ 0.31
SDC3O75056 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 AC005332.8-201ENST00000622750 2735 ntBASIC16.97■□□□□ 0.31
SDC3O75056 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDC3O75056 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms