Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
PROM1O43490 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.55■□□□□ 0.24
PROM1O43490 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.55■□□□□ 0.24
PROM1O43490 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.55■□□□□ 0.24
PROM1O43490 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
PROM1O43490 STK25P1-201ENST00000585406 838 ntBASIC16.55■□□□□ 0.24
PROM1O43490 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.55■□□□□ 0.24
PROM1O43490 AL691432.3-201ENST00000621860 400 ntBASIC16.55■□□□□ 0.24
PROM1O43490 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 CROCCP2-202ENST00000412962 2773 ntBASIC16.55■□□□□ 0.24
PROM1O43490 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PROM1O43490 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 AL645608.8-201ENST00000606034 2086 ntBASIC16.55■□□□□ 0.24
PROM1O43490 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
PROM1O43490 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.54■□□□□ 0.24
PROM1O43490 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.54■□□□□ 0.24
PROM1O43490 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.54■□□□□ 0.24
PROM1O43490 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.54■□□□□ 0.24
PROM1O43490 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.54■□□□□ 0.24
PROM1O43490 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.54■□□□□ 0.24
PROM1O43490 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.54■□□□□ 0.24
PROM1O43490 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.54■□□□□ 0.24
PROM1O43490 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.54■□□□□ 0.24
PROM1O43490 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.54■□□□□ 0.24
PROM1O43490 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.54■□□□□ 0.24
PROM1O43490 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.54■□□□□ 0.24
PROM1O43490 AL591684.3-201ENST00000605187 298 ntBASIC16.54■□□□□ 0.24
PROM1O43490 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.54■□□□□ 0.24
PROM1O43490 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PROM1O43490 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.54■□□□□ 0.24
PROM1O43490 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PROM1O43490 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PROM1O43490 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PROM1O43490 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
PROM1O43490 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 PMPCAP1-201ENST00000508114 1576 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms