Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RPS2P1-201ENST00000434010 821 ntBASIC19.04■□□□□ 0.64
CLDN3O15551 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.04■□□□□ 0.64
CLDN3O15551 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.04■□□□□ 0.64
CLDN3O15551 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.04■□□□□ 0.64
CLDN3O15551 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.04■□□□□ 0.64
CLDN3O15551 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.04■□□□□ 0.64
CLDN3O15551 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.04■□□□□ 0.64
CLDN3O15551 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.04■□□□□ 0.64
CLDN3O15551 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 AC046185.3-201ENST00000623228 1824 ntBASIC19.04■□□□□ 0.64
CLDN3O15551 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CLDN3O15551 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CLDN3O15551 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN3O15551 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 HLA-A-201ENST00000376802 1334 ntBASIC19.03■□□□□ 0.64
CLDN3O15551 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CLDN3O15551 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 HNRNPDP1-201ENST00000439535 754 ntBASIC19.03■□□□□ 0.64
CLDN3O15551 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.03■□□□□ 0.64
CLDN3O15551 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.03■□□□□ 0.64
CLDN3O15551 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 AP001005.1-201ENST00000571755 1248 ntBASIC19.03■□□□□ 0.64
CLDN3O15551 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.03■□□□□ 0.64
CLDN3O15551 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
CLDN3O15551 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.03■□□□□ 0.64
CLDN3O15551 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN3O15551 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CLDN3O15551 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN3O15551 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.02■□□□□ 0.64
CLDN3O15551 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN3O15551 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN3O15551 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 OR7E14P-202ENST00000530490 1290 ntBASIC19.02■□□□□ 0.64
CLDN3O15551 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.02■□□□□ 0.64
CLDN3O15551 AC107918.4-202ENST00000641623 219 ntBASIC19.02■□□□□ 0.64
CLDN3O15551 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN3O15551 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN3O15551 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN3O15551 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLDN3O15551 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLDN3O15551 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
CLDN3O15551 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLDN3O15551 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN3O15551 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CLDN3O15551 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CLDN3O15551 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CLDN3O15551 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CLDN3O15551 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN3O15551 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN3O15551 AC093909.1-201ENST00000504731 1122 ntBASIC19.01■□□□□ 0.63
CLDN3O15551 RNA5SP419-201ENST00000515908 135 ntBASIC19.01■□□□□ 0.63
CLDN3O15551 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN3O15551 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.01■□□□□ 0.63
CLDN3O15551 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN3O15551 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.01■□□□□ 0.63
CLDN3O15551 FAM215A-202ENST00000632077 792 ntBASIC19.01■□□□□ 0.63
CLDN3O15551 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms