Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 AL133373.2-201ENST00000623187 2828 ntBASIC18.04■□□□□ 0.48
HPS4Q9NQG7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS4Q9NQG7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 AC009949.1-201ENST00000623048 1830 ntBASIC18.03■□□□□ 0.48
HPS4Q9NQG7 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.03■□□□□ 0.48
HPS4Q9NQG7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 IGHV3-65-201ENST00000523210 341 ntBASIC18.03■□□□□ 0.48
HPS4Q9NQG7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS4Q9NQG7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 MCCD1P2-201ENST00000423228 335 ntBASIC18.02■□□□□ 0.48
HPS4Q9NQG7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 RPS15P9-201ENST00000494093 319 ntBASIC18.02■□□□□ 0.48
HPS4Q9NQG7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 STK25P1-201ENST00000585406 838 ntBASIC18.02■□□□□ 0.48
HPS4Q9NQG7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 AC092865.6-201ENST00000642101 219 ntBASIC18.02■□□□□ 0.48
HPS4Q9NQG7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HPS4Q9NQG7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HPS4Q9NQG7 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HPS4Q9NQG7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HPS4Q9NQG7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.01■□□□□ 0.47
HPS4Q9NQG7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HPS4Q9NQG7 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.01■□□□□ 0.47
HPS4Q9NQG7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms