Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 HR-201ENST00000312841 5351 ntTSL 5 BASIC22.71■■□□□ 1.23
RTF1Q92541 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC22.71■■□□□ 1.23
RTF1Q92541 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 PTCHD3P3-201ENST00000403073 906 ntBASIC22.71■■□□□ 1.23
RTF1Q92541 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 AC108073.2-201ENST00000464002 357 ntBASIC22.71■■□□□ 1.23
RTF1Q92541 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 AL355312.1-201ENST00000407115 2176 ntBASIC22.71■■□□□ 1.23
RTF1Q92541 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC22.71■■□□□ 1.23
RTF1Q92541 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC22.71■■□□□ 1.23
RTF1Q92541 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
RTF1Q92541 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC22.71■■□□□ 1.23
RTF1Q92541 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
RTF1Q92541 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC22.71■■□□□ 1.23
RTF1Q92541 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
RTF1Q92541 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC22.7■■□□□ 1.23
RTF1Q92541 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC22.7■■□□□ 1.23
RTF1Q92541 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
RTF1Q92541 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.23
RTF1Q92541 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
RTF1Q92541 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
RTF1Q92541 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
RTF1Q92541 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 COX10-202ENST00000429152 875 ntTSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.7■■□□□ 1.22
RTF1Q92541 MIR4751-201ENST00000578027 74 ntBASIC22.7■■□□□ 1.22
RTF1Q92541 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 AC064836.3-201ENST00000607928 673 ntBASIC22.7■■□□□ 1.22
RTF1Q92541 GPALPP1-207ENST00000611650 899 ntBASIC22.7■■□□□ 1.22
RTF1Q92541 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.22
RTF1Q92541 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC22.7■■□□□ 1.22
RTF1Q92541 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RTF1Q92541 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
RTF1Q92541 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC22.69■■□□□ 1.22
RTF1Q92541 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC22.69■■□□□ 1.22
RTF1Q92541 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC22.69■■□□□ 1.22
RTF1Q92541 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC22.69■■□□□ 1.22
RTF1Q92541 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 CRYGEP-201ENST00000412192 528 ntBASIC22.69■■□□□ 1.22
RTF1Q92541 BX842568.4-201ENST00000421222 227 ntBASIC22.69■■□□□ 1.22
RTF1Q92541 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.69■■□□□ 1.22
RTF1Q92541 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC22.69■■□□□ 1.22
RTF1Q92541 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.69■■□□□ 1.22
RTF1Q92541 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC22.69■■□□□ 1.22
RTF1Q92541 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC22.69■■□□□ 1.22
RTF1Q92541 AC006538.3-201ENST00000612495 578 ntBASIC22.69■■□□□ 1.22
RTF1Q92541 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
RTF1Q92541 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
RTF1Q92541 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTF1Q92541 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
RTF1Q92541 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
RTF1Q92541 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
RTF1Q92541 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC22.69■■□□□ 1.22
RTF1Q92541 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC22.68■■□□□ 1.22
RTF1Q92541 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC22.68■■□□□ 1.22
RTF1Q92541 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
RTF1Q92541 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC22.68■■□□□ 1.22
RTF1Q92541 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
RTF1Q92541 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.68■■□□□ 1.22
RTF1Q92541 AP002414.1-201ENST00000391405 1147 ntBASIC22.68■■□□□ 1.22
RTF1Q92541 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC22.68■■□□□ 1.22
RTF1Q92541 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC22.68■■□□□ 1.22
RTF1Q92541 AC004790.2-201ENST00000623588 572 ntBASIC22.68■■□□□ 1.22
RTF1Q92541 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC22.68■■□□□ 1.22
RTF1Q92541 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.68■■□□□ 1.22
RTF1Q92541 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms