Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 CROCCP1-201ENST00000426910 5675 ntBASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 AC020916.1-201ENST00000587762 1774 ntBASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNE3Q6ZMZ3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 AC091304.2-201ENST00000564639 760 ntBASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 LINC01711-201ENST00000598340 967 ntBASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 AL353593.2-201ENST00000602529 1483 ntBASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 LYSMD4-203ENST00000378904 2122 ntBASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.53■□□□□ 0.88
SYNE3Q6ZMZ3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 CLEC4GP1-201ENST00000596555 870 ntBASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 AD001527.2-201ENST00000622994 785 ntBASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNE3Q6ZMZ3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 AC139713.2-201ENST00000641328 2723 ntBASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNE3Q6ZMZ3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms