Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 AL450487.1-201ENST00000426799 995 ntBASIC21.06■□□□□ 0.96
VPS53Q5VIR6 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS53Q5VIR6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 EMBP1-201ENST00000458200 901 ntBASIC21.05■□□□□ 0.96
VPS53Q5VIR6 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 AP000867.4-201ENST00000641616 219 ntBASIC21.05■□□□□ 0.96
VPS53Q5VIR6 AC132938.5-201ENST00000624980 1813 ntBASIC21.05■□□□□ 0.96
VPS53Q5VIR6 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 AL353593.2-201ENST00000602529 1483 ntBASIC21.05■□□□□ 0.96
VPS53Q5VIR6 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS53Q5VIR6 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 ABCD1P5-201ENST00000445663 754 ntBASIC21.04■□□□□ 0.96
VPS53Q5VIR6 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 AF238378.1-201ENST00000526806 358 ntBASIC21.04■□□□□ 0.96
VPS53Q5VIR6 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 AL691432.3-201ENST00000621860 400 ntBASIC21.04■□□□□ 0.96
VPS53Q5VIR6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 PMPCAP1-201ENST00000508114 1576 ntBASIC21.04■□□□□ 0.96
VPS53Q5VIR6 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS53Q5VIR6 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms