Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CL1P78423 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CL1P78423 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CL1P78423 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CL1P78423 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CX3CL1P78423 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CL1P78423 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CL1P78423 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CL1P78423 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CX3CL1P78423 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CX3CL1P78423 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CX3CL1P78423 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CL1P78423 NKILA-202ENST00000614771 2598 ntBASIC14.09□□□□□ -0.15
CX3CL1P78423 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CL1P78423 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CL1P78423 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CL1P78423 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
CX3CL1P78423 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CL1P78423 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CL1P78423 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CL1P78423 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CL1P78423 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CL1P78423 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CL1P78423 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
CX3CL1P78423 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.15
CX3CL1P78423 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CL1P78423 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
CX3CL1P78423 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 DRAXINP1-201ENST00000437611 948 ntBASIC14.08□□□□□ -0.16
CX3CL1P78423 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC14.08□□□□□ -0.16
CX3CL1P78423 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.08□□□□□ -0.16
CX3CL1P78423 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.08□□□□□ -0.16
CX3CL1P78423 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.08□□□□□ -0.16
CX3CL1P78423 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 BX276092.7-203ENST00000637198 1536 ntBASIC14.08□□□□□ -0.16
CX3CL1P78423 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 AL118508.1-201ENST00000613502 2345 ntBASIC14.08□□□□□ -0.16
CX3CL1P78423 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CX3CL1P78423 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC14.08□□□□□ -0.16
CX3CL1P78423 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.08□□□□□ -0.16
CX3CL1P78423 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CL1P78423 AC011676.5-201ENST00000624864 2660 ntBASIC14.08□□□□□ -0.16
CX3CL1P78423 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CX3CL1P78423 AL355312.1-201ENST00000407115 2176 ntBASIC14.07□□□□□ -0.16
CX3CL1P78423 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CX3CL1P78423 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CX3CL1P78423 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CX3CL1P78423 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CX3CL1P78423 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CX3CL1P78423 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.07□□□□□ -0.16
CX3CL1P78423 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 UPK3BP1-201ENST00000428678 509 ntBASIC14.07□□□□□ -0.16
CX3CL1P78423 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.07□□□□□ -0.16
CX3CL1P78423 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.07□□□□□ -0.16
CX3CL1P78423 TOB2P1-201ENST00000469761 992 ntBASIC14.07□□□□□ -0.16
CX3CL1P78423 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.07□□□□□ -0.16
CX3CL1P78423 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 TPSP2-201ENST00000561760 610 ntBASIC14.07□□□□□ -0.16
CX3CL1P78423 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.07□□□□□ -0.16
CX3CL1P78423 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.07□□□□□ -0.16
CX3CL1P78423 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms