Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXA1P55317 GUSBP12-201ENST00000513727 720 ntBASIC16.89■□□□□ 0.29
FOXA1P55317 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXA1P55317 AL353801.3-201ENST00000609898 542 ntBASIC16.89■□□□□ 0.29
FOXA1P55317 AC124864.1-201ENST00000623408 392 ntBASIC16.89■□□□□ 0.29
FOXA1P55317 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
FOXA1P55317 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
FOXA1P55317 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 AL049757.1-201ENST00000616842 1596 ntBASIC16.89■□□□□ 0.29
FOXA1P55317 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
FOXA1P55317 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
FOXA1P55317 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA1P55317 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 RCN1P1-201ENST00000400413 996 ntBASIC16.88■□□□□ 0.29
FOXA1P55317 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.88■□□□□ 0.29
FOXA1P55317 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA1P55317 RN7SL850P-201ENST00000579959 291 ntBASIC16.88■□□□□ 0.29
FOXA1P55317 AL138831.2-201ENST00000606564 490 ntBASIC16.88■□□□□ 0.29
FOXA1P55317 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.88■□□□□ 0.29
FOXA1P55317 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
FOXA1P55317 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
FOXA1P55317 PCDHB19P-201ENST00000570871 2371 ntBASIC16.88■□□□□ 0.29
FOXA1P55317 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
FOXA1P55317 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.88■□□□□ 0.29
FOXA1P55317 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA1P55317 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
FOXA1P55317 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 AC092068.3-201ENST00000587894 2016 ntBASIC16.87■□□□□ 0.29
FOXA1P55317 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA1P55317 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
FOXA1P55317 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA1P55317 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA1P55317 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 DUX4L26-201ENST00000489078 1255 ntBASIC16.87■□□□□ 0.29
FOXA1P55317 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
FOXA1P55317 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
FOXA1P55317 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
FOXA1P55317 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
FOXA1P55317 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA1P55317 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA1P55317 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA1P55317 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms