Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.69■□□□□ 0.26
MSX2P35548 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 AC092068.3-201ENST00000587894 2016 ntBASIC16.69■□□□□ 0.26
MSX2P35548 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 AC007950.2-201ENST00000615045 2347 ntBASIC16.68■□□□□ 0.26
MSX2P35548 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
MSX2P35548 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
MSX2P35548 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.68■□□□□ 0.26
MSX2P35548 SEC1P-202ENST00000473944 940 ntBASIC16.68■□□□□ 0.26
MSX2P35548 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.68■□□□□ 0.26
MSX2P35548 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.68■□□□□ 0.26
MSX2P35548 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.68■□□□□ 0.26
MSX2P35548 AC024243.1-201ENST00000609234 778 ntBASIC16.68■□□□□ 0.26
MSX2P35548 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.68■□□□□ 0.26
MSX2P35548 FAM197Y4-202ENST00000622692 608 ntBASIC16.68■□□□□ 0.26
MSX2P35548 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.68■□□□□ 0.26
MSX2P35548 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
MSX2P35548 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.68■□□□□ 0.26
MSX2P35548 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSX2P35548 LINC02012-201ENST00000608206 1725 ntBASIC16.67■□□□□ 0.26
MSX2P35548 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.67■□□□□ 0.26
MSX2P35548 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.67■□□□□ 0.26
MSX2P35548 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 TSPY17P-201ENST00000450329 467 ntBASIC16.67■□□□□ 0.26
MSX2P35548 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 EMC9-206ENST00000560403 872 ntTSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.67■□□□□ 0.26
MSX2P35548 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.67■□□□□ 0.26
MSX2P35548 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
MSX2P35548 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.67■□□□□ 0.26
MSX2P35548 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.67■□□□□ 0.26
MSX2P35548 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSX2P35548 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms