Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.84■□□□□ 0.45
VCANP13611 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.84■□□□□ 0.45
VCANP13611 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.84■□□□□ 0.45
VCANP13611 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.84■□□□□ 0.45
VCANP13611 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.84■□□□□ 0.45
VCANP13611 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.84■□□□□ 0.45
VCANP13611 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.84■□□□□ 0.45
VCANP13611 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.84■□□□□ 0.45
VCANP13611 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VCANP13611 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.83■□□□□ 0.45
VCANP13611 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
VCANP13611 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
VCANP13611 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCANP13611 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCANP13611 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
VCANP13611 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
VCANP13611 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCANP13611 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCANP13611 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCANP13611 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.83■□□□□ 0.45
VCANP13611 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
VCANP13611 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.83■□□□□ 0.45
VCANP13611 AC004790.1-201ENST00000612686 536 ntBASIC17.83■□□□□ 0.45
VCANP13611 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
VCANP13611 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.83■□□□□ 0.44
VCANP13611 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCANP13611 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCANP13611 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.83■□□□□ 0.44
VCANP13611 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCANP13611 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCANP13611 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VCANP13611 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.83■□□□□ 0.44
VCANP13611 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.83■□□□□ 0.44
VCANP13611 GOLGA2P4-201ENST00000441462 777 ntBASIC17.83■□□□□ 0.44
VCANP13611 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VCANP13611 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCANP13611 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
VCANP13611 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.82■□□□□ 0.44
VCANP13611 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.82■□□□□ 0.44
VCANP13611 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.82■□□□□ 0.44
VCANP13611 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VCANP13611 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.82■□□□□ 0.44
VCANP13611 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.82■□□□□ 0.44
VCANP13611 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.82■□□□□ 0.44
VCANP13611 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.82■□□□□ 0.44
VCANP13611 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.82■□□□□ 0.44
VCANP13611 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCANP13611 AC253536.4-201ENST00000440539 267 ntBASIC17.82■□□□□ 0.44
VCANP13611 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.82■□□□□ 0.44
VCANP13611 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.82■□□□□ 0.44
VCANP13611 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.82■□□□□ 0.44
VCANP13611 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.81■□□□□ 0.44
VCANP13611 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VCANP13611 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VCANP13611 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VCANP13611 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.81■□□□□ 0.44
VCANP13611 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.81■□□□□ 0.44
VCANP13611 AP000842.3-202ENST00000569238 1080 ntBASIC17.81■□□□□ 0.44
VCANP13611 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.81■□□□□ 0.44
VCANP13611 AKAP8P1-201ENST00000434743 1349 ntBASIC17.81■□□□□ 0.44
VCANP13611 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.81■□□□□ 0.44
VCANP13611 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.81■□□□□ 0.44
VCANP13611 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.81■□□□□ 0.44
VCANP13611 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 TTTY23B-201ENST00000442790 549 ntBASIC17.81■□□□□ 0.44
VCANP13611 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms