Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL161645.1-201ENST00000622716 1255 ntBASIC17.94■□□□□ 0.46
COL6A3P12111 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A3P12111 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL6A3P12111 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
COL6A3P12111 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A3P12111 ESPNP-201ENST00000270691 2015 ntBASIC17.94■□□□□ 0.46
COL6A3P12111 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A3P12111 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.94■□□□□ 0.46
COL6A3P12111 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A3P12111 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.94■□□□□ 0.46
COL6A3P12111 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.93■□□□□ 0.46
COL6A3P12111 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 AC018665.1-201ENST00000622927 1362 ntBASIC17.93■□□□□ 0.46
COL6A3P12111 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL6A3P12111 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A3P12111 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
COL6A3P12111 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A3P12111 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A3P12111 KRT8P13-201ENST00000463294 1010 ntBASIC17.93■□□□□ 0.46
COL6A3P12111 HLA-V-204ENST00000476601 1289 ntBASIC17.93■□□□□ 0.46
COL6A3P12111 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A3P12111 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
COL6A3P12111 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A3P12111 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A3P12111 MIR5572-201ENST00000583188 137 ntBASIC17.93■□□□□ 0.46
COL6A3P12111 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A3P12111 AC007967.4-201ENST00000614700 386 ntBASIC17.93■□□□□ 0.46
COL6A3P12111 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 WASH6P-202ENST00000359512 1437 ntBASIC17.93■□□□□ 0.46
COL6A3P12111 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A3P12111 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL6A3P12111 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
COL6A3P12111 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A3P12111 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A3P12111 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL6A3P12111 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A3P12111 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A3P12111 AC018529.1-201ENST00000613063 361 ntBASIC17.92■□□□□ 0.46
COL6A3P12111 AL645728.2-201ENST00000641974 660 ntBASIC17.92■□□□□ 0.46
COL6A3P12111 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A3P12111 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL6A3P12111 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A3P12111 USP32P1-208ENST00000506594 1164 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 AC107918.2-201ENST00000530817 355 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A3P12111 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL6A3P12111 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms