Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.18■□□□□ 0.66
MMP3P08254 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.18■□□□□ 0.66
MMP3P08254 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.18■□□□□ 0.66
MMP3P08254 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.18■□□□□ 0.66
MMP3P08254 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 LYSMD4-203ENST00000378904 2122 ntBASIC19.18■□□□□ 0.66
MMP3P08254 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.17■□□□□ 0.66
MMP3P08254 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.17■□□□□ 0.66
MMP3P08254 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 AL139400.1-201ENST00000366220 510 ntBASIC19.17■□□□□ 0.66
MMP3P08254 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.17■□□□□ 0.66
MMP3P08254 AC004461.1-201ENST00000412461 403 ntBASIC19.17■□□□□ 0.66
MMP3P08254 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.17■□□□□ 0.66
MMP3P08254 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.17■□□□□ 0.66
MMP3P08254 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
MMP3P08254 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.17■□□□□ 0.66
MMP3P08254 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.17■□□□□ 0.66
MMP3P08254 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.17■□□□□ 0.66
MMP3P08254 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.17■□□□□ 0.66
MMP3P08254 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
MMP3P08254 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.17■□□□□ 0.66
MMP3P08254 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.17■□□□□ 0.66
MMP3P08254 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MMP3P08254 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.16■□□□□ 0.66
MMP3P08254 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MMP3P08254 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MMP3P08254 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.16■□□□□ 0.66
MMP3P08254 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.16■□□□□ 0.66
MMP3P08254 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.16■□□□□ 0.66
MMP3P08254 AC107918.2-201ENST00000530817 355 ntBASIC19.16■□□□□ 0.66
MMP3P08254 AC004835.2-201ENST00000603762 682 ntBASIC19.16■□□□□ 0.66
MMP3P08254 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 AC106028.4-201ENST00000614509 607 ntBASIC19.16■□□□□ 0.66
MMP3P08254 AC093028.1-201ENST00000622998 982 ntBASIC19.16■□□□□ 0.66
MMP3P08254 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.16■□□□□ 0.66
MMP3P08254 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.16■□□□□ 0.66
MMP3P08254 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP3P08254 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.16■□□□□ 0.66
MMP3P08254 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
MMP3P08254 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
MMP3P08254 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 AL121761.2-201ENST00000598007 1648 ntBASIC19.15■□□□□ 0.66
MMP3P08254 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
MMP3P08254 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 ADH5P3-201ENST00000433842 1137 ntBASIC19.15■□□□□ 0.66
MMP3P08254 AC112191.1-201ENST00000523689 701 ntBASIC19.15■□□□□ 0.66
MMP3P08254 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
MMP3P08254 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.15■□□□□ 0.66
MMP3P08254 AC022145.2-201ENST00000598203 171 ntBASIC19.15■□□□□ 0.66
MMP3P08254 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 LINC02084-201ENST00000606069 1096 ntBASIC19.15■□□□□ 0.66
MMP3P08254 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.15■□□□□ 0.66
MMP3P08254 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.15■□□□□ 0.66
MMP3P08254 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.15■□□□□ 0.66
MMP3P08254 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
MMP3P08254 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP3P08254 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.15■□□□□ 0.66
MMP3P08254 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
MMP3P08254 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.15■□□□□ 0.66
MMP3P08254 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.15■□□□□ 0.66
MMP3P08254 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms