Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CLPTM1O96005 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.52■□□□□ 0.24
CLPTM1O96005 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.52■□□□□ 0.24
CLPTM1O96005 RBM17P1-201ENST00000453646 1190 ntBASIC16.52■□□□□ 0.24
CLPTM1O96005 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.52■□□□□ 0.24
CLPTM1O96005 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CLPTM1O96005 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.52■□□□□ 0.24
CLPTM1O96005 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 FSCN1P1-201ENST00000568912 1481 ntBASIC16.52■□□□□ 0.23
CLPTM1O96005 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.52■□□□□ 0.23
CLPTM1O96005 LYSMD4-203ENST00000378904 2122 ntBASIC16.52■□□□□ 0.23
CLPTM1O96005 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.52■□□□□ 0.23
CLPTM1O96005 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.52■□□□□ 0.23
CLPTM1O96005 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.52■□□□□ 0.23
CLPTM1O96005 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLPTM1O96005 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.52■□□□□ 0.23
CLPTM1O96005 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.51■□□□□ 0.23
CLPTM1O96005 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 AC004951.3-201ENST00000418645 1148 ntBASIC16.51■□□□□ 0.23
CLPTM1O96005 AC008040.2-201ENST00000461049 708 ntBASIC16.51■□□□□ 0.23
CLPTM1O96005 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.51■□□□□ 0.23
CLPTM1O96005 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 AC011298.2-201ENST00000617989 482 ntBASIC16.51■□□□□ 0.23
CLPTM1O96005 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 AC005915.1-201ENST00000624912 2018 ntBASIC16.51■□□□□ 0.23
CLPTM1O96005 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.51■□□□□ 0.23
CLPTM1O96005 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.51■□□□□ 0.23
CLPTM1O96005 AC093010.1-201ENST00000473625 1624 ntBASIC16.51■□□□□ 0.23
CLPTM1O96005 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLPTM1O96005 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
CLPTM1O96005 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLPTM1O96005 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLPTM1O96005 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLPTM1O96005 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 UNC93B2-201ENST00000285383 730 ntBASIC16.5■□□□□ 0.23
CLPTM1O96005 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.5■□□□□ 0.23
CLPTM1O96005 AC091390.4-202ENST00000476426 537 ntBASIC16.5■□□□□ 0.23
CLPTM1O96005 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.5■□□□□ 0.23
CLPTM1O96005 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.5■□□□□ 0.23
CLPTM1O96005 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.5■□□□□ 0.23
CLPTM1O96005 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.5■□□□□ 0.23
CLPTM1O96005 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.5■□□□□ 0.23
CLPTM1O96005 AP000525.1-201ENST00000608286 694 ntBASIC16.5■□□□□ 0.23
CLPTM1O96005 AC130371.2-201ENST00000619443 611 ntBASIC16.5■□□□□ 0.23
CLPTM1O96005 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CLPTM1O96005 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 KRT8P3-201ENST00000519669 1449 ntBASIC16.5■□□□□ 0.23
CLPTM1O96005 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLPTM1O96005 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms