Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17■□□□□ 0.31
HDAC3O15379 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17■□□□□ 0.31
HDAC3O15379 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17■□□□□ 0.31
HDAC3O15379 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17■□□□□ 0.31
HDAC3O15379 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17■□□□□ 0.31
HDAC3O15379 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17■□□□□ 0.31
HDAC3O15379 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17■□□□□ 0.31
HDAC3O15379 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC3O15379 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC3O15379 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC3O15379 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17■□□□□ 0.31
HDAC3O15379 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
HDAC3O15379 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
HDAC3O15379 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC3O15379 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17■□□□□ 0.31
HDAC3O15379 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC3O15379 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HDAC3O15379 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 RNF216P1-203ENST00000404404 2427 ntBASIC16.99■□□□□ 0.31
HDAC3O15379 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 AC078925.2-201ENST00000624013 1973 ntBASIC16.99■□□□□ 0.31
HDAC3O15379 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
HDAC3O15379 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.99■□□□□ 0.31
HDAC3O15379 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.99■□□□□ 0.31
HDAC3O15379 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.99■□□□□ 0.31
HDAC3O15379 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 AC141257.4-201ENST00000634557 245 ntBASIC16.99■□□□□ 0.31
HDAC3O15379 AC136944.6-201ENST00000634818 245 ntBASIC16.99■□□□□ 0.31
HDAC3O15379 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.99■□□□□ 0.31
HDAC3O15379 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.99■□□□□ 0.31
HDAC3O15379 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDAC3O15379 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HDAC3O15379 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
HDAC3O15379 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HDAC3O15379 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.98■□□□□ 0.31
HDAC3O15379 MMP23A-201ENST00000234610 1017 ntBASIC16.98■□□□□ 0.31
HDAC3O15379 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.98■□□□□ 0.31
HDAC3O15379 MTCL1P1-201ENST00000446207 792 ntBASIC16.98■□□□□ 0.31
HDAC3O15379 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.98■□□□□ 0.31
HDAC3O15379 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.98■□□□□ 0.31
HDAC3O15379 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.98■□□□□ 0.31
HDAC3O15379 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
HDAC3O15379 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.98■□□□□ 0.31
HDAC3O15379 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 AC046158.3-201ENST00000624947 2558 ntBASIC16.98■□□□□ 0.31
HDAC3O15379 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
HDAC3O15379 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.98■□□□□ 0.31
HDAC3O15379 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HDAC3O15379 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms