Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 AC078925.2-201ENST00000624013 1973 ntBASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 AL845331.1-201ENST00000424978 1190 ntBASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 GUSBP12-201ENST00000513727 720 ntBASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LIMA1Q9UHB6 RNF216P1-203ENST00000404404 2427 ntBASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 STK25P1-201ENST00000585406 838 ntBASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 AC005336.2-201ENST00000593183 939 ntBASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 KRT8P10-201ENST00000450021 1447 ntBASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMA1Q9UHB6 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 AC092068.3-201ENST00000587894 2016 ntBASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 AC103564.2-201ENST00000432853 1299 ntBASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms