Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC25A1P3-201ENST00000395415 828 ntBASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 AC128688.1-201ENST00000487626 519 ntBASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28BQ9BUN5 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 OR6D1P-203ENST00000641209 4860 ntBASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PRORSD1P-201ENST00000295112 541 ntBASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 MIR1238-201ENST00000408483 83 ntBASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 AC112698.1-201ENST00000510299 916 ntBASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC28BQ9BUN5 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 INGX-201ENST00000359239 846 ntBASIC17■□□□□ 0.31
CCDC28BQ9BUN5 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 GXYLT1P4-201ENST00000613576 1192 ntBASIC17■□□□□ 0.31
CCDC28BQ9BUN5 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28BQ9BUN5 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28BQ9BUN5 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CCDC28BQ9BUN5 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC28BQ9BUN5 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28BQ9BUN5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28BQ9BUN5 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28BQ9BUN5 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms