Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.82■□□□□ 0.6
LRCH3Q96II8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.82■□□□□ 0.6
LRCH3Q96II8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LRCH3Q96II8 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.82■□□□□ 0.6
LRCH3Q96II8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 AC069120.2-201ENST00000524091 540 ntBASIC18.81■□□□□ 0.6
LRCH3Q96II8 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 MIR4525-201ENST00000580000 75 ntBASIC18.81■□□□□ 0.6
LRCH3Q96II8 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 AC068587.10-201ENST00000641210 219 ntBASIC18.81■□□□□ 0.6
LRCH3Q96II8 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRCH3Q96II8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.81■□□□□ 0.6
LRCH3Q96II8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AL133338.1-201ENST00000565695 1517 ntBASIC18.8■□□□□ 0.6
LRCH3Q96II8 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AL353593.2-201ENST00000602529 1483 ntBASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC132938.5-201ENST00000624980 1813 ntBASIC18.8■□□□□ 0.6
LRCH3Q96II8 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC092580.3-201ENST00000430932 139 ntBASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 FAM86C2P-203ENST00000528684 1004 ntBASIC18.8■□□□□ 0.6
LRCH3Q96II8 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRCH3Q96II8 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.8■□□□□ 0.6
LRCH3Q96II8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 MIR658-201ENST00000385210 100 ntBASIC18.79■□□□□ 0.6
LRCH3Q96II8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 AC103564.2-201ENST00000432853 1299 ntBASIC18.79■□□□□ 0.6
LRCH3Q96II8 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 ACA64.2-201ENST00000459014 129 ntBASIC18.79■□□□□ 0.6
LRCH3Q96II8 GIMAP3P-201ENST00000495150 836 ntBASIC18.79■□□□□ 0.6
LRCH3Q96II8 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.79■□□□□ 0.6
LRCH3Q96II8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRCH3Q96II8 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms