Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 AC060834.1-201ENST00000443027 2032 ntBASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ZNF540Q8NDQ6 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 LINC02199-201ENST00000506655 2702 ntBASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 DUX4L26-201ENST00000489078 1255 ntBASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 PKD1P5-201ENST00000532415 10291 ntBASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ZNF540Q8NDQ6 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 AC036111.1-201ENST00000533973 1582 ntBASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 AL603756.1-201ENST00000606511 2163 ntBASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 PCDHA1-201ENST00000378133 2726 ntBASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ZNF540Q8NDQ6 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ZNF540Q8NDQ6 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ZNF540Q8NDQ6 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
ZNF540Q8NDQ6 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
ZNF540Q8NDQ6 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
ZNF540Q8NDQ6 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms