Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 RPS15P9-201ENST00000494093 319 ntBASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.49■□□□□ 0.39
HDDC3Q8N4P3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 BICD1-207ENST00000551848 1962 ntBASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 MCCD1P2-201ENST00000423228 335 ntBASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 CYMP-203ENST00000474680 1263 ntBASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms