Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 AC106730.1-201ENST00000566722 1090 ntBASIC16.23■□□□□ 0.19
BEST3Q8N1M1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 AC004817.3-201ENST00000602957 2129 ntBASIC16.23■□□□□ 0.19
BEST3Q8N1M1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 AC008735.5-201ENST00000623544 497 ntBASIC16.23■□□□□ 0.19
BEST3Q8N1M1 AL022326.1-202ENST00000641533 845 ntBASIC16.23■□□□□ 0.19
BEST3Q8N1M1 AC107918.4-202ENST00000641623 219 ntBASIC16.23■□□□□ 0.19
BEST3Q8N1M1 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
BEST3Q8N1M1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 SPDYE21P-201ENST00000413323 827 ntBASIC16.22■□□□□ 0.19
BEST3Q8N1M1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 AC023511.2-201ENST00000618803 211 ntBASIC16.22■□□□□ 0.19
BEST3Q8N1M1 AC073592.4-201ENST00000623827 446 ntBASIC16.22■□□□□ 0.19
BEST3Q8N1M1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BEST3Q8N1M1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 LAGE3P1-201ENST00000425356 484 ntBASIC16.21■□□□□ 0.19
BEST3Q8N1M1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 AC098831.1-202ENST00000438821 336 ntBASIC16.21■□□□□ 0.19
BEST3Q8N1M1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 KRT18P58-201ENST00000527480 1120 ntBASIC16.21■□□□□ 0.19
BEST3Q8N1M1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 ZNF259P1-201ENST00000407656 1365 ntBASIC16.21■□□□□ 0.19
BEST3Q8N1M1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 AL353593.2-201ENST00000602529 1483 ntBASIC16.21■□□□□ 0.19
BEST3Q8N1M1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
BEST3Q8N1M1 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms