Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AC005104.2-201ENST00000427818 678 ntBASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AP001269.4-201ENST00000609611 512 ntBASIC21.09■□□□□ 0.97
VPS53Q5VIR6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS53Q5VIR6 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 KRT126P-201ENST00000549467 1181 ntBASIC21.08■□□□□ 0.97
VPS53Q5VIR6 AC109462.3-201ENST00000573934 613 ntBASIC21.08■□□□□ 0.97
VPS53Q5VIR6 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 AD001527.2-201ENST00000622994 785 ntBASIC21.08■□□□□ 0.97
VPS53Q5VIR6 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VPS53Q5VIR6 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.08■□□□□ 0.96
VPS53Q5VIR6 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 AL023806.1-201ENST00000603994 1649 ntBASIC21.07■□□□□ 0.96
VPS53Q5VIR6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
VPS53Q5VIR6 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms