Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 AL008721.1-201ENST00000609964 604 ntBASIC16.78■□□□□ 0.28
COL28A1Q2UY09 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 AL031432.2-201ENST00000566714 459 ntBASIC16.77■□□□□ 0.28
COL28A1Q2UY09 AL928711.1-201ENST00000570165 459 ntBASIC16.77■□□□□ 0.28
COL28A1Q2UY09 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 Z92544.3-201ENST00000624747 417 ntBASIC16.77■□□□□ 0.28
COL28A1Q2UY09 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 GPR89P-201ENST00000407924 1495 ntBASIC16.77■□□□□ 0.28
COL28A1Q2UY09 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL28A1Q2UY09 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 SDHAP2-201ENST00000455183 2001 ntBASIC16.77■□□□□ 0.27
COL28A1Q2UY09 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL28A1Q2UY09 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 CRYGEP-201ENST00000412192 528 ntBASIC16.76■□□□□ 0.27
COL28A1Q2UY09 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms