Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
HMGCS2P54868 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HMGCS2P54868 AC087163.2-201ENST00000457299 853 ntBASIC20.04■□□□□ 0.8
HMGCS2P54868 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGCS2P54868 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.04■□□□□ 0.8
HMGCS2P54868 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGCS2P54868 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGCS2P54868 AC011467.4-201ENST00000594891 528 ntBASIC20.04■□□□□ 0.8
HMGCS2P54868 AC093512.1-201ENST00000617969 520 ntBASIC20.04■□□□□ 0.8
HMGCS2P54868 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
HMGCS2P54868 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.04■□□□□ 0.8
HMGCS2P54868 AL121761.2-201ENST00000598007 1648 ntBASIC20.04■□□□□ 0.8
HMGCS2P54868 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HMGCS2P54868 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGCS2P54868 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGCS2P54868 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 AC109322.1-201ENST00000524499 1264 ntBASIC20.03■□□□□ 0.8
HMGCS2P54868 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGCS2P54868 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGCS2P54868 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGCS2P54868 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGCS2P54868 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
HMGCS2P54868 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
HMGCS2P54868 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGCS2P54868 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGCS2P54868 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGCS2P54868 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGCS2P54868 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGCS2P54868 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGCS2P54868 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGCS2P54868 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
HMGCS2P54868 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HMGCS2P54868 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGCS2P54868 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGCS2P54868 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HMGCS2P54868 HLA-J-203ENST00000494367 1087 ntBASIC20.02■□□□□ 0.8
HMGCS2P54868 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGCS2P54868 AC112191.1-201ENST00000523689 701 ntBASIC20.02■□□□□ 0.8
HMGCS2P54868 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.02■□□□□ 0.8
HMGCS2P54868 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGCS2P54868 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGCS2P54868 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGCS2P54868 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
HMGCS2P54868 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGCS2P54868 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGCS2P54868 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGCS2P54868 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.02■□□□□ 0.79
HMGCS2P54868 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGCS2P54868 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGCS2P54868 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.02■□□□□ 0.79
HMGCS2P54868 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGCS2P54868 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
HMGCS2P54868 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.79
HMGCS2P54868 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
HMGCS2P54868 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGCS2P54868 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGCS2P54868 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HMGCS2P54868 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGCS2P54868 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGCS2P54868 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGCS2P54868 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGCS2P54868 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGCS2P54868 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGCS2P54868 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGCS2P54868 ADH5P3-201ENST00000433842 1137 ntBASIC20.01■□□□□ 0.79
HMGCS2P54868 AC023141.5-201ENST00000458585 616 ntBASIC20.01■□□□□ 0.79
HMGCS2P54868 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.01■□□□□ 0.79
HMGCS2P54868 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
HMGCS2P54868 SPCS2P1-201ENST00000561636 679 ntBASIC20.01■□□□□ 0.79
HMGCS2P54868 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGCS2P54868 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms