Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.61■□□□□ 0.25
RORAP35398 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RORAP35398 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RORAP35398 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.61■□□□□ 0.25
RORAP35398 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.61■□□□□ 0.25
RORAP35398 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
RORAP35398 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.6■□□□□ 0.25
RORAP35398 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.6■□□□□ 0.25
RORAP35398 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RORAP35398 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 AC003669.1-201ENST00000334569 611 ntBASIC16.6■□□□□ 0.25
RORAP35398 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.6■□□□□ 0.25
RORAP35398 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.6■□□□□ 0.25
RORAP35398 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.6■□□□□ 0.25
RORAP35398 TERC-201ENST00000602385 541 ntBASIC16.6■□□□□ 0.25
RORAP35398 GPALPP1-207ENST00000611650 899 ntBASIC16.6■□□□□ 0.25
RORAP35398 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
RORAP35398 AL589182.2-201ENST00000619332 1049 ntBASIC16.6■□□□□ 0.25
RORAP35398 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 PMS2P7-201ENST00000506558 1336 ntBASIC16.6■□□□□ 0.25
RORAP35398 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.6■□□□□ 0.25
RORAP35398 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RORAP35398 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RORAP35398 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.6■□□□□ 0.25
RORAP35398 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 AC148477.5-201ENST00000625164 1645 ntBASIC16.59■□□□□ 0.25
RORAP35398 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
RORAP35398 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RORAP35398 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.59■□□□□ 0.25
RORAP35398 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.59■□□□□ 0.25
RORAP35398 AC073621.1-201ENST00000392730 636 ntBASIC16.59■□□□□ 0.25
RORAP35398 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.59■□□□□ 0.25
RORAP35398 KLF4P1-201ENST00000412782 1185 ntBASIC16.59■□□□□ 0.25
RORAP35398 UNC93B6-202ENST00000528242 690 ntBASIC16.59■□□□□ 0.25
RORAP35398 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.59■□□□□ 0.25
RORAP35398 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.59■□□□□ 0.25
RORAP35398 AL356488.2-201ENST00000602755 427 ntBASIC16.59■□□□□ 0.25
RORAP35398 AC027601.4-201ENST00000611259 610 ntBASIC16.59■□□□□ 0.25
RORAP35398 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.59■□□□□ 0.25
RORAP35398 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.59■□□□□ 0.25
RORAP35398 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RORAP35398 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RORAP35398 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.59■□□□□ 0.25
RORAP35398 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
RORAP35398 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RORAP35398 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
RORAP35398 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RORAP35398 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.58■□□□□ 0.25
RORAP35398 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RORAP35398 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.58■□□□□ 0.25
RORAP35398 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.58■□□□□ 0.25
RORAP35398 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
RORAP35398 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RORAP35398 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms