Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 TSSK5P-201ENST00000423978 907 ntBASIC20.73■□□□□ 0.91
COL4A5P29400 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A5P29400 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.73■□□□□ 0.91
COL4A5P29400 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
COL4A5P29400 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL4A5P29400 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A5P29400 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A5P29400 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A5P29400 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A5P29400 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A5P29400 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A5P29400 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A5P29400 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A5P29400 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.72■□□□□ 0.91
COL4A5P29400 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.72■□□□□ 0.91
COL4A5P29400 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 OR8S1-201ENST00000310194 1080 ntBASIC20.72■□□□□ 0.91
COL4A5P29400 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL4A5P29400 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.72■□□□□ 0.91
COL4A5P29400 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A5P29400 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.72■□□□□ 0.91
COL4A5P29400 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A5P29400 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A5P29400 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL4A5P29400 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A5P29400 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
COL4A5P29400 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A5P29400 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.71■□□□□ 0.91
COL4A5P29400 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.71■□□□□ 0.91
COL4A5P29400 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.71■□□□□ 0.91
COL4A5P29400 ALG1L8P-201ENST00000533887 760 ntBASIC20.71■□□□□ 0.91
COL4A5P29400 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.71■□□□□ 0.91
COL4A5P29400 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.71■□□□□ 0.91
COL4A5P29400 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.71■□□□□ 0.91
COL4A5P29400 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A5P29400 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A5P29400 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
COL4A5P29400 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL4A5P29400 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL4A5P29400 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A5P29400 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A5P29400 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
COL4A5P29400 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL4A5P29400 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.7■□□□□ 0.91
COL4A5P29400 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.7■□□□□ 0.91
COL4A5P29400 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.7■□□□□ 0.91
COL4A5P29400 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.7■□□□□ 0.91
COL4A5P29400 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A5P29400 KRT18P55-202ENST00000578578 1546 ntBASIC20.7■□□□□ 0.9
COL4A5P29400 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A5P29400 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
COL4A5P29400 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A5P29400 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.7■□□□□ 0.9
COL4A5P29400 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.7■□□□□ 0.9
COL4A5P29400 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A5P29400 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
COL4A5P29400 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.7■□□□□ 0.9
COL4A5P29400 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A5P29400 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.7■□□□□ 0.9
COL4A5P29400 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A5P29400 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms