Protein–RNA interactions for Protein: P01033

TIMP1, Metalloproteinase inhibitor 1, humanhuman

Predictions only

Length 207 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1P01033 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP1P01033 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TIMP1P01033 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP1P01033 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP1P01033 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP1P01033 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP1P01033 NME2P1-201ENST00000426182 414 ntBASIC18.71■□□□□ 0.59
TIMP1P01033 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.71■□□□□ 0.59
TIMP1P01033 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.71■□□□□ 0.59
TIMP1P01033 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP1P01033 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.71■□□□□ 0.59
TIMP1P01033 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.71■□□□□ 0.59
TIMP1P01033 AC025048.6-201ENST00000634326 1161 ntBASIC18.71■□□□□ 0.59
TIMP1P01033 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP1P01033 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.7■□□□□ 0.58
TIMP1P01033 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.7■□□□□ 0.58
TIMP1P01033 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 AC092580.3-201ENST00000430932 139 ntBASIC18.7■□□□□ 0.58
TIMP1P01033 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.7■□□□□ 0.58
TIMP1P01033 SERBP1P5-201ENST00000510079 1181 ntBASIC18.7■□□□□ 0.58
TIMP1P01033 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TIMP1P01033 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.7■□□□□ 0.58
TIMP1P01033 SPDYE22P-201ENST00000582158 798 ntBASIC18.7■□□□□ 0.58
TIMP1P01033 AL009183.1-201ENST00000603760 355 ntBASIC18.7■□□□□ 0.58
TIMP1P01033 MIR6080-201ENST00000617359 66 ntBASIC18.7■□□□□ 0.58
TIMP1P01033 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.7■□□□□ 0.58
TIMP1P01033 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.7■□□□□ 0.58
TIMP1P01033 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TIMP1P01033 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP1P01033 AL020996.1-203ENST00000536896 2307 ntBASIC18.69■□□□□ 0.58
TIMP1P01033 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TIMP1P01033 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP1P01033 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP1P01033 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.69■□□□□ 0.58
TIMP1P01033 PIN1P1-201ENST00000412108 996 ntBASIC18.69■□□□□ 0.58
TIMP1P01033 HLA-V-201ENST00000429037 534 ntBASIC18.69■□□□□ 0.58
TIMP1P01033 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.69■□□□□ 0.58
TIMP1P01033 AL596325.1-201ENST00000563991 1082 ntBASIC18.69■□□□□ 0.58
TIMP1P01033 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
TIMP1P01033 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 AL662799.1-202ENST00000614205 422 ntBASIC18.69■□□□□ 0.58
TIMP1P01033 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TIMP1P01033 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TIMP1P01033 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP1P01033 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP1P01033 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP1P01033 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TIMP1P01033 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP1P01033 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP1P01033 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms