Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 AP002414.3-201ENST00000589352 1468 ntBASIC18.65■□□□□ 0.58
SIX4Q9UIU6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 AC006504.4-201ENST00000592118 1568 ntBASIC18.65■□□□□ 0.58
SIX4Q9UIU6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 ELK2BP-201ENST00000415014 1224 ntBASIC18.65■□□□□ 0.58
SIX4Q9UIU6 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 AC079776.4-201ENST00000511039 504 ntBASIC18.65■□□□□ 0.58
SIX4Q9UIU6 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 AL139424.1-201ENST00000607572 797 ntBASIC18.65■□□□□ 0.58
SIX4Q9UIU6 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.65■□□□□ 0.58
SIX4Q9UIU6 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX4Q9UIU6 CROCCP2-202ENST00000412962 2773 ntBASIC18.64■□□□□ 0.58
SIX4Q9UIU6 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX4Q9UIU6 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX4Q9UIU6 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SIX4Q9UIU6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX4Q9UIU6 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 RPS2P28-201ENST00000314255 741 ntBASIC18.64■□□□□ 0.57
SIX4Q9UIU6 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 AC105339.3-201ENST00000560043 636 ntBASIC18.64■□□□□ 0.57
SIX4Q9UIU6 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX4Q9UIU6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms