Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 AC087499.1-201ENST00000418141 1075 ntBASIC16.75■□□□□ 0.27
PIF1Q9H611 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.75■□□□□ 0.27
PIF1Q9H611 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.75■□□□□ 0.27
PIF1Q9H611 MIR3917-201ENST00000580971 93 ntBASIC16.75■□□□□ 0.27
PIF1Q9H611 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.75■□□□□ 0.27
PIF1Q9H611 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 AC145285.6-201ENST00000604632 637 ntBASIC16.75■□□□□ 0.27
PIF1Q9H611 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.75■□□□□ 0.27
PIF1Q9H611 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PIF1Q9H611 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.74■□□□□ 0.27
PIF1Q9H611 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.74■□□□□ 0.27
PIF1Q9H611 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PIF1Q9H611 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
PIF1Q9H611 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 KRT8P47-201ENST00000604727 1398 ntBASIC16.74■□□□□ 0.27
PIF1Q9H611 FLJ38576-201ENST00000623820 2459 ntBASIC16.74■□□□□ 0.27
PIF1Q9H611 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.74■□□□□ 0.27
PIF1Q9H611 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PIF1Q9H611 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.73■□□□□ 0.27
PIF1Q9H611 CYP2D8P-201ENST00000433633 1490 ntBASIC16.73■□□□□ 0.27
PIF1Q9H611 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
PIF1Q9H611 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.73■□□□□ 0.27
PIF1Q9H611 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
PIF1Q9H611 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PIF1Q9H611 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.73■□□□□ 0.27
PIF1Q9H611 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.73■□□□□ 0.27
PIF1Q9H611 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.73■□□□□ 0.27
PIF1Q9H611 AC092865.7-201ENST00000641832 219 ntBASIC16.73■□□□□ 0.27
PIF1Q9H611 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
PIF1Q9H611 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
PIF1Q9H611 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.73■□□□□ 0.27
PIF1Q9H611 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PIF1Q9H611 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.73■□□□□ 0.27
PIF1Q9H611 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PIF1Q9H611 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PIF1Q9H611 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms