Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 IGHV3-62-201ENST00000520057 340 ntBASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 AL358472.5-202ENST00000641448 1267 ntBASIC20.77■□□□□ 0.91
ZNF541Q9H0D2 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 AC004890.2-204ENST00000481968 304 ntBASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 MIR6752-201ENST00000618442 71 ntBASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.76■□□□□ 0.91
ZNF541Q9H0D2 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 AC084121.4-201ENST00000641598 221 ntBASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 AF228730.8-201ENST00000642140 221 ntBASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.75■□□□□ 0.91
ZNF541Q9H0D2 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 AC073592.3-201ENST00000625118 1834 ntBASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.74■□□□□ 0.91
ZNF541Q9H0D2 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 AC022494.1-201ENST00000466044 728 ntBASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms