Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 AL139327.4-201ENST00000612362 153 ntBASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PAAF1Q9BRP4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 AL390961.4-201ENST00000623958 2535 ntBASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
PAAF1Q9BRP4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 MRPL20P1-201ENST00000400819 433 ntBASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 DNAJB3-201ENST00000446806 729 ntBASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PAAF1Q9BRP4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 PI4KAP1-204ENST00000612579 1703 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 LYSMD4-203ENST00000378904 2122 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 RPS8P6-201ENST00000426177 609 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 MIR3687-2-201ENST00000577708 61 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 MIR3687-1-201ENST00000614492 61 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 AC010654.1-201ENST00000615722 808 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 LINC01451-201ENST00000623792 534 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 AC010507.1-201ENST00000633895 436 ntBASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PAAF1Q9BRP4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 MCCD1P2-201ENST00000423228 335 ntBASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.56■□□□□ 0.56
PAAF1Q9BRP4 ALG1L5P-201ENST00000482043 771 ntBASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms