Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 MIR4515-201ENST00000584082 81 ntBASIC23.52■■□□□ 1.36
NPHP3Q7Z494 AC025048.6-201ENST00000634326 1161 ntBASIC23.52■■□□□ 1.36
NPHP3Q7Z494 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
NPHP3Q7Z494 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 GATD1-206ENST00000526325 756 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 MMP17-203ENST00000535004 719 ntTSL 3 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
NPHP3Q7Z494 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 UXT-AS1-201ENST00000590504 1525 ntBASIC23.5■■□□□ 1.35
NPHP3Q7Z494 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 PPP6R2P1-201ENST00000450880 1275 ntBASIC23.5■■□□□ 1.35
NPHP3Q7Z494 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP3Q7Z494 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 AC046185.3-201ENST00000623228 1824 ntBASIC23.49■■□□□ 1.35
NPHP3Q7Z494 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 AC092580.3-201ENST00000430932 139 ntBASIC23.49■■□□□ 1.35
NPHP3Q7Z494 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 SERBP1P5-201ENST00000510079 1181 ntBASIC23.49■■□□□ 1.35
NPHP3Q7Z494 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 NOP2-220ENST00000545915 630 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 MIR6080-201ENST00000617359 66 ntBASIC23.49■■□□□ 1.35
NPHP3Q7Z494 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP3Q7Z494 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 NME2P1-201ENST00000426182 414 ntBASIC23.48■■□□□ 1.35
NPHP3Q7Z494 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 AL596325.1-201ENST00000563991 1082 ntBASIC23.48■■□□□ 1.35
NPHP3Q7Z494 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 MIR6752-201ENST00000618442 71 ntBASIC23.48■■□□□ 1.35
NPHP3Q7Z494 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP3Q7Z494 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC23.47■■□□□ 1.35
NPHP3Q7Z494 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP3Q7Z494 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
NPHP3Q7Z494 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms