Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.66■□□□□ 0.1
CLRN1P58418 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.66■□□□□ 0.1
CLRN1P58418 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.66■□□□□ 0.1
CLRN1P58418 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CLRN1P58418 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN1P58418 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLRN1P58418 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.66■□□□□ 0.1
CLRN1P58418 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLRN1P58418 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CLRN1P58418 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CLRN1P58418 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 MIR1224-201ENST00000408193 85 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 AC002558.1-201ENST00000488906 803 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 IGHV3-52-201ENST00000519770 353 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CLRN1P58418 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CLRN1P58418 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 AL138831.2-201ENST00000606564 490 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 AC069148.1-201ENST00000608741 768 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 AC091076.1-201ENST00000610741 619 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 AC010331.1-201ENST00000611423 582 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 AL358472.4-201ENST00000633140 710 ntBASIC15.65■□□□□ 0.1
CLRN1P58418 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN1P58418 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLRN1P58418 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN1P58418 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.64■□□□□ 0.1
CLRN1P58418 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN1P58418 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CLRN1P58418 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CLRN1P58418 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CLRN1P58418 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN1P58418 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN1P58418 FAM220CP-201ENST00000395253 831 ntBASIC15.64■□□□□ 0.09
CLRN1P58418 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN1P58418 CROCCP2-202ENST00000412962 2773 ntBASIC15.64■□□□□ 0.09
CLRN1P58418 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms