Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC239800.4-201ENST00000603712 296 ntBASIC18.75■□□□□ 0.59
VCPP55072 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VCPP55072 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.75■□□□□ 0.59
VCPP55072 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VCPP55072 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VCPP55072 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.74■□□□□ 0.59
VCPP55072 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.74■□□□□ 0.59
VCPP55072 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VCPP55072 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VCPP55072 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 LINC00602-201ENST00000629776 2065 ntBASIC18.74■□□□□ 0.59
VCPP55072 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.74■□□□□ 0.59
VCPP55072 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.74■□□□□ 0.59
VCPP55072 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 AC092910.1-201ENST00000482027 1129 ntBASIC18.74■□□□□ 0.59
VCPP55072 RFPL4AP1-201ENST00000530883 850 ntBASIC18.74■□□□□ 0.59
VCPP55072 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.74■□□□□ 0.59
VCPP55072 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
VCPP55072 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.74■□□□□ 0.59
VCPP55072 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 Z83851.2-201ENST00000609564 659 ntBASIC18.74■□□□□ 0.59
VCPP55072 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
VCPP55072 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.74■□□□□ 0.59
VCPP55072 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCPP55072 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VCPP55072 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VCPP55072 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.73■□□□□ 0.59
VCPP55072 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 AL035633.1-201ENST00000406139 838 ntBASIC18.73■□□□□ 0.59
VCPP55072 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.73■□□□□ 0.59
VCPP55072 FAM8A3P-201ENST00000427218 844 ntBASIC18.73■□□□□ 0.59
VCPP55072 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.73■□□□□ 0.59
VCPP55072 AC092364.2-202ENST00000597012 1073 ntBASIC18.73■□□□□ 0.59
VCPP55072 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.73■□□□□ 0.59
VCPP55072 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCPP55072 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.72■□□□□ 0.59
VCPP55072 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VCPP55072 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
VCPP55072 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.72■□□□□ 0.59
VCPP55072 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.72■□□□□ 0.59
VCPP55072 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VCPP55072 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.72■□□□□ 0.59
VCPP55072 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.72■□□□□ 0.59
VCPP55072 RNA5SP415-201ENST00000517246 115 ntBASIC18.72■□□□□ 0.59
VCPP55072 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.72■□□□□ 0.59
VCPP55072 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.72■□□□□ 0.59
VCPP55072 AP001269.4-201ENST00000609611 512 ntBASIC18.72■□□□□ 0.59
VCPP55072 AL596442.2-201ENST00000610240 980 ntBASIC18.72■□□□□ 0.59
VCPP55072 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.72■□□□□ 0.59
VCPP55072 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VCPP55072 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.72■□□□□ 0.59
VCPP55072 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VCPP55072 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCPP55072 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.71■□□□□ 0.59
VCPP55072 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms