Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.99■□□□□ 0.31
PDX1P52945 DNAJB3-201ENST00000446806 729 ntBASIC16.99■□□□□ 0.31
PDX1P52945 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.99■□□□□ 0.31
PDX1P52945 AC004967.1-201ENST00000453589 447 ntBASIC16.99■□□□□ 0.31
PDX1P52945 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.99■□□□□ 0.31
PDX1P52945 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
PDX1P52945 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
PDX1P52945 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.99■□□□□ 0.31
PDX1P52945 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PDX1P52945 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PDX1P52945 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.99■□□□□ 0.31
PDX1P52945 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.99■□□□□ 0.31
PDX1P52945 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PDX1P52945 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDX1P52945 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.98■□□□□ 0.31
PDX1P52945 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.98■□□□□ 0.31
PDX1P52945 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.98■□□□□ 0.31
PDX1P52945 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.98■□□□□ 0.31
PDX1P52945 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.98■□□□□ 0.31
PDX1P52945 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.98■□□□□ 0.31
PDX1P52945 AC006557.2-201ENST00000592985 1240 ntBASIC16.98■□□□□ 0.31
PDX1P52945 AC064836.3-201ENST00000607928 673 ntBASIC16.98■□□□□ 0.31
PDX1P52945 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.98■□□□□ 0.31
PDX1P52945 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PDX1P52945 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
PDX1P52945 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 AC093010.1-201ENST00000473625 1624 ntBASIC16.98■□□□□ 0.31
PDX1P52945 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.98■□□□□ 0.31
PDX1P52945 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 AC138028.4-201ENST00000564984 1845 ntBASIC16.98■□□□□ 0.31
PDX1P52945 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDX1P52945 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.98■□□□□ 0.31
PDX1P52945 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.97■□□□□ 0.31
PDX1P52945 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.97■□□□□ 0.31
PDX1P52945 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PDX1P52945 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PDX1P52945 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.97■□□□□ 0.31
PDX1P52945 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.97■□□□□ 0.31
PDX1P52945 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 AC023274.1-201ENST00000418278 595 ntBASIC16.97■□□□□ 0.31
PDX1P52945 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PDX1P52945 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.97■□□□□ 0.31
PDX1P52945 AC002347.1-201ENST00000569543 541 ntBASIC16.97■□□□□ 0.31
PDX1P52945 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDX1P52945 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.97■□□□□ 0.31
PDX1P52945 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms