Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 POM121L3P-201ENST00000419331 1163 ntBASIC17.65■□□□□ 0.42
CHRNA4P43681 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.65■□□□□ 0.42
CHRNA4P43681 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.65■□□□□ 0.42
CHRNA4P43681 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.65■□□□□ 0.42
CHRNA4P43681 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.65■□□□□ 0.42
CHRNA4P43681 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CHRNA4P43681 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
CHRNA4P43681 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.65■□□□□ 0.42
CHRNA4P43681 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CHRNA4P43681 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CHRNA4P43681 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.65■□□□□ 0.42
CHRNA4P43681 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHRNA4P43681 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.64■□□□□ 0.42
CHRNA4P43681 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.64■□□□□ 0.42
CHRNA4P43681 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CHRNA4P43681 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CHRNA4P43681 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
CHRNA4P43681 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CHRNA4P43681 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CHRNA4P43681 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.64■□□□□ 0.41
CHRNA4P43681 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.64■□□□□ 0.41
CHRNA4P43681 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CHRNA4P43681 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.64■□□□□ 0.41
CHRNA4P43681 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.64■□□□□ 0.41
CHRNA4P43681 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.64■□□□□ 0.41
CHRNA4P43681 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 AC111152.3-201ENST00000569699 673 ntBASIC17.64■□□□□ 0.41
CHRNA4P43681 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.64■□□□□ 0.41
CHRNA4P43681 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.64■□□□□ 0.41
CHRNA4P43681 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
CHRNA4P43681 MIR3652-201ENST00000579335 131 ntBASIC17.64■□□□□ 0.41
CHRNA4P43681 MIR5100-201ENST00000579544 119 ntBASIC17.64■□□□□ 0.41
CHRNA4P43681 STK25P1-201ENST00000585406 838 ntBASIC17.64■□□□□ 0.41
CHRNA4P43681 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.64■□□□□ 0.41
CHRNA4P43681 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 AD001527.2-201ENST00000622994 785 ntBASIC17.64■□□□□ 0.41
CHRNA4P43681 AC012313.10-201ENST00000623509 926 ntBASIC17.64■□□□□ 0.41
CHRNA4P43681 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CHRNA4P43681 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.64■□□□□ 0.41
CHRNA4P43681 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.64■□□□□ 0.41
CHRNA4P43681 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHRNA4P43681 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CHRNA4P43681 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.63■□□□□ 0.41
CHRNA4P43681 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.63■□□□□ 0.41
CHRNA4P43681 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.63■□□□□ 0.41
CHRNA4P43681 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHRNA4P43681 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.63■□□□□ 0.41
CHRNA4P43681 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CHRNA4P43681 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CHRNA4P43681 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CHRNA4P43681 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CHRNA4P43681 AP001094.4-201ENST00000579008 2176 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms