Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
APOEP02649 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.36■□□□□ 0.53
APOEP02649 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 UNC93B7-201ENST00000509439 705 ntBASIC18.36■□□□□ 0.53
APOEP02649 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.36■□□□□ 0.53
APOEP02649 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.36■□□□□ 0.53
APOEP02649 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.36■□□□□ 0.53
APOEP02649 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.36■□□□□ 0.53
APOEP02649 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
APOEP02649 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
APOEP02649 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.35■□□□□ 0.53
APOEP02649 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.35■□□□□ 0.53
APOEP02649 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.35■□□□□ 0.53
APOEP02649 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.35■□□□□ 0.53
APOEP02649 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.35■□□□□ 0.53
APOEP02649 AC103564.2-201ENST00000432853 1299 ntBASIC18.35■□□□□ 0.53
APOEP02649 TPM4P1-201ENST00000436100 807 ntBASIC18.35■□□□□ 0.53
APOEP02649 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.35■□□□□ 0.53
APOEP02649 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
APOEP02649 RN7SL510P-201ENST00000581311 263 ntBASIC18.35■□□□□ 0.53
APOEP02649 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
APOEP02649 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
APOEP02649 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOEP02649 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.34■□□□□ 0.53
APOEP02649 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.34■□□□□ 0.53
APOEP02649 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 AC132008.2-207ENST00000454517 770 ntBASIC18.34■□□□□ 0.53
APOEP02649 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.34■□□□□ 0.53
APOEP02649 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.34■□□□□ 0.53
APOEP02649 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.34■□□□□ 0.53
APOEP02649 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
APOEP02649 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
APOEP02649 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
APOEP02649 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.34■□□□□ 0.53
APOEP02649 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.33■□□□□ 0.53
APOEP02649 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.33■□□□□ 0.53
APOEP02649 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms