Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC22.92■■□□□ 1.26
COL3A1P02461 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL3A1P02461 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.92■■□□□ 1.26
COL3A1P02461 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC22.92■■□□□ 1.26
COL3A1P02461 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL3A1P02461 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL3A1P02461 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL3A1P02461 AC093525.9-201ENST00000624961 1746 ntBASIC22.92■■□□□ 1.26
COL3A1P02461 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
COL3A1P02461 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC22.92■■□□□ 1.26
COL3A1P02461 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL3A1P02461 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.92■■□□□ 1.26
COL3A1P02461 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
COL3A1P02461 RNA5SP416-201ENST00000516838 111 ntBASIC22.92■■□□□ 1.26
COL3A1P02461 GGTLC5P-201ENST00000617623 998 ntBASIC22.92■■□□□ 1.26
COL3A1P02461 AL513190.1-201ENST00000621254 727 ntBASIC22.92■■□□□ 1.26
COL3A1P02461 REXO1L3P-201ENST00000622202 1288 ntBASIC22.92■■□□□ 1.26
COL3A1P02461 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
COL3A1P02461 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC22.91■■□□□ 1.26
COL3A1P02461 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
COL3A1P02461 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC22.91■■□□□ 1.26
COL3A1P02461 PMS2P7-201ENST00000506558 1336 ntBASIC22.91■■□□□ 1.26
COL3A1P02461 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 SLC4A1APP2-201ENST00000424054 1259 ntBASIC22.91■■□□□ 1.26
COL3A1P02461 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC22.91■■□□□ 1.26
COL3A1P02461 ALG1L5P-201ENST00000482043 771 ntBASIC22.91■■□□□ 1.26
COL3A1P02461 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC22.91■■□□□ 1.26
COL3A1P02461 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL3A1P02461 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
COL3A1P02461 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 BX842568.4-201ENST00000421222 227 ntBASIC22.9■■□□□ 1.26
COL3A1P02461 AC004832.2-201ENST00000426397 482 ntBASIC22.9■■□□□ 1.26
COL3A1P02461 RHOQP3-201ENST00000437982 621 ntBASIC22.9■■□□□ 1.26
COL3A1P02461 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC22.9■■□□□ 1.26
COL3A1P02461 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC22.9■■□□□ 1.26
COL3A1P02461 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.9■■□□□ 1.26
COL3A1P02461 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.9■■□□□ 1.26
COL3A1P02461 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC22.9■■□□□ 1.26
COL3A1P02461 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL3A1P02461 AC018470.1-201ENST00000624790 3129 ntBASIC22.9■■□□□ 1.26
COL3A1P02461 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC22.9■■□□□ 1.26
COL3A1P02461 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 PC-214ENST00000628663 1470 ntTSL 5 BASIC22.89■■□□□ 1.26
COL3A1P02461 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC22.89■■□□□ 1.26
COL3A1P02461 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC22.89■■□□□ 1.26
COL3A1P02461 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC22.89■■□□□ 1.26
COL3A1P02461 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL3A1P02461 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
COL3A1P02461 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL3A1P02461 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
COL3A1P02461 YBX2P1-201ENST00000394192 760 ntBASIC22.89■■□□□ 1.25
COL3A1P02461 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.89■■□□□ 1.25
COL3A1P02461 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC22.89■■□□□ 1.25
COL3A1P02461 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC22.89■■□□□ 1.25
COL3A1P02461 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL3A1P02461 AC040169.1-201ENST00000565382 521 ntBASIC22.89■■□□□ 1.25
COL3A1P02461 AC092865.6-201ENST00000642101 219 ntBASIC22.89■■□□□ 1.25
COL3A1P02461 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
COL3A1P02461 PI4KAP1-204ENST00000612579 1703 ntBASIC22.89■■□□□ 1.25
COL3A1P02461 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC22.89■■□□□ 1.25
COL3A1P02461 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL3A1P02461 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC22.88■■□□□ 1.25
COL3A1P02461 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL3A1P02461 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL3A1P02461 MIR940-201ENST00000401276 94 ntBASIC22.88■■□□□ 1.25
COL3A1P02461 CRYGEP-201ENST00000412192 528 ntBASIC22.88■■□□□ 1.25
COL3A1P02461 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC22.88■■□□□ 1.25
COL3A1P02461 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC22.88■■□□□ 1.25
COL3A1P02461 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC22.88■■□□□ 1.25
COL3A1P02461 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC22.88■■□□□ 1.25
COL3A1P02461 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms