Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC116353.5-201ENST00000638148 1699 ntBASIC13.19□□□□□ -0.3
HLA-DQA1P01909 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 EMC9-206ENST00000560403 872 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC034236.2-201ENST00000606662 1610 ntBASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC104640.1-201ENST00000562617 2109 ntBASIC13.19□□□□□ -0.3
HLA-DQA1P01909 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 AC100803.2-201ENST00000562459 1963 ntBASIC13.18□□□□□ -0.3
HLA-DQA1P01909 AL136379.1-201ENST00000623471 2642 ntBASIC13.18□□□□□ -0.3
HLA-DQA1P01909 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 AC099063.4-201ENST00000641099 1602 ntBASIC13.18□□□□□ -0.3
HLA-DQA1P01909 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HLA-DQA1P01909 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DQA1P01909 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DQA1P01909 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DQA1P01909 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DQA1P01909 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DQA1P01909 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms