Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LDB3O75112 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 AL450487.1-201ENST00000426799 995 ntBASIC16.47■□□□□ 0.23
LDB3O75112 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.47■□□□□ 0.23
LDB3O75112 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.47■□□□□ 0.23
LDB3O75112 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.47■□□□□ 0.23
LDB3O75112 AP000867.4-201ENST00000641616 219 ntBASIC16.47■□□□□ 0.23
LDB3O75112 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
LDB3O75112 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
LDB3O75112 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LDB3O75112 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 PMPCAP1-201ENST00000508114 1576 ntBASIC16.47■□□□□ 0.23
LDB3O75112 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 AP005117.1-201ENST00000584346 1413 ntBASIC16.46■□□□□ 0.23
LDB3O75112 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
LDB3O75112 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 AKR1C7P-201ENST00000305623 895 ntBASIC16.46■□□□□ 0.23
LDB3O75112 MYCLP1-201ENST00000372451 1075 ntBASIC16.46■□□□□ 0.23
LDB3O75112 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.46■□□□□ 0.23
LDB3O75112 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.46■□□□□ 0.23
LDB3O75112 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.46■□□□□ 0.23
LDB3O75112 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
LDB3O75112 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.46■□□□□ 0.23
LDB3O75112 KRT126P-201ENST00000549467 1181 ntBASIC16.46■□□□□ 0.23
LDB3O75112 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.46■□□□□ 0.23
LDB3O75112 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 AL139327.4-201ENST00000612362 153 ntBASIC16.46■□□□□ 0.23
LDB3O75112 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.46■□□□□ 0.23
LDB3O75112 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
LDB3O75112 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.46■□□□□ 0.23
LDB3O75112 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.46■□□□□ 0.23
LDB3O75112 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
LDB3O75112 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
LDB3O75112 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDB3O75112 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
LDB3O75112 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.46■□□□□ 0.22
LDB3O75112 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LDB3O75112 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.45■□□□□ 0.22
LDB3O75112 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.45■□□□□ 0.22
LDB3O75112 KLF4P1-201ENST00000412782 1185 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms